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There's something else going on here.
This issue cover also RED/Mysterium/CMOS skew and frame rates redraw at LCD.
Somebody who works for a serious feature film should get a pro LCD monitor for editing and grading like a eCinema, Cinetal, Sony or any similar.
it seems to be a prores only problem. when we play the same clips as dpx on the baselight it runs ok. so prores is only a offline base for us. hopefully apple will get on this problem. it is a big pitty to show customers a offline edit and they are asking why sometimes the footage stutters. i am more and more loving avid.
Export your R3Ds to 1080P ProResHQ using Red Rushes, Redcine, Clipfinder, whatever program you choose to export from.
Import ProRes clip into FCP. Create a new sequence. Drag the ProRes clip to new sequence. When it asks if you want to match sequence to clip settings say yes. You should see no render bars. Make sure you are in Dynamic Playback mode (this will play the clip at a quality the computer can handle). Play clip. Does it stutter? If it does, maybe try selecting High quality playback to see what happens.
At this point your sequence is setup properly, so you can rule out a sequence setting problem.